1. Home
  2. Mutant Lines
  3. 11-6819-1

11-6819-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 467762 [Map]; Strand: c
      • AT1G02340.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-6819-1 - 5-prime edge 
    NGGAAAAACT AACAAAATCG GTTATACAGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCA TTTTCTCGGA CAAAGCTGAA ATCCCTAAAG 
    AAAAAACACT TCTCCAAACT TTTCATCTCC GATATCTCTT TAACTAACAT 
    GTAAGTATAA TTAAACAGGA CAGTTTCAGA GTTTAGGTTT CTTGCCTTGT 
    TATTCTCTTT ATTTTTTTTA AAAATAATTT ATCAATGATT TGTATCGTAA 
    ACCCTAATAG TTTACTACNT TTTTTCTTGG CAGGTCGAAT AATCAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 467779 [Map]; Strand: c
      • AT1G02340.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 11-6819-1 - 3-prime edge 
    AATTGAAAAC GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC 
    GCTTATGTTA TAAGAGCGAT CGGATCAGAT AGATGGTATA GTTGTCAGCT 
    ACATTGGTGA CCCACTTATA TTGTGCCACG TTTCAAAGTA TGTGTGGTTC 
    GTTTGTTGCG TACACCGACA ACAATAAAAC AATTCGGCTA GATTCTAACA 
    TACAGCTACA CGAGGTTATT ATAGACATAT TGATGTCATT TGAGTTCTTT 
    GGAAACAATA CTTTTTTGGA TTCACAACAA ACATTGTAAT GAAAATATTG 
    TTTTACTAAA ATAATTAATA CAGTAATTAA ATTAGTTTTT ATTTTGGAAA 
    AGTATTGTCA AATAATTCCA TTATCACAAA TTCACAATGT ACTTAAATGG 
    ATTATTATTC TGCTTATTGT TTTTATGATT CTATACGTAA TTGTCCCAAA 
    ACTACGTCAT AGTAGCATAT ATCGACTTTA GAGTAATCTT GAAATTTTGC 
    ACAGAAAGAT AAAAGTAATC TTGATTAATC AATAATGTCA CTAGATTCAC 
    TACCACTTTG ACACATGAAC ATAGAGATAA ATTTATCTTT GTACGTATAG 
    AATGTATTCA TTTATATATT GAGATTTGAG AGACAGTTTA ATAGTATTTC 
    TTAACCAAGA ACTGTAATGC ACAACGGGTA GGGCCATTTT TATCCGTTTA 
    ATTATTTTTC CCGTAATCTT ATCGTTATCA TTNAATACTC GNNATTAAGC 
    TACCNCCC

AT1G02340.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary
Encodes a light-inducible, nuclear bHLH protein involved in phytochrome signaling. Mutants exhibit a long-hypocotyl phenotype only under far-red light but not under red light and are defective in other phytochrome A-related responses. Mutants also show blue light response defects. HFR1 interacts with COP1, co-localizes to the nuclear specks and is ubiquinated by COP1.
Computational Description
LONG HYPOCOTYL IN FAR-RED (HFR1); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome interacting factor 3 (TAIR:AT1G09530.2); Has 1715 Blast hits to 1709 proteins in 90 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4; Plants - 1707; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR