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11-5894-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 212158 [Map]; Strand: w
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: 0; Region: intron5 (CDS)
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 11-5894-1 - 5-prime edge 
    CCTGTAACAA ACAAGGATCA AAAACAGATG TAACCATGTA TCATTCATAA 
    TCAGACCGAG AATAGTCATA TACATTTTTC GGATAATATA TGTTACCATA 
    AGCATTGAAT CTAGCCTTTC TCAATGCAGG CAAGTTGATA TAGATATCTG 
    CTCTTGGTCT ACTCTCCATC ACCTGAACAA CTCACCAACA AAGTTTTCAT 
    TTTTCCATTT TTTGTCTTTC AGTTTTCATA CAAAATATTT GACAAGTTAC 
    TTACCTCAAC AGTAGCTCCA TTGCTTAGAT TCTGACATCT AGGGATGAAT 
    T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 212114 [Map]; Strand: w
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: 0; Region: intron5 (CDS)
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 11-5894-1 - 3-prime edge 
    ATTGAAAAAC GGTTAGGAAG GTCTTTTTTT TACCCGNACC CGTTTTACCC 
    GGACCCGTTT TTTCATTCCC TAGTTACAGG AAGCATTGGA TAGTTTTCAG 
    AACACAGAGT TTTGGTATGC AGAAGAAGGA AGTTTATCGA TGAATCAGCT 
    CGTCTTCGAC TGGATCNTTC AGGGAAAGTT TTTGTNCCAA GGNAANAAAA 
    AAAANGGGGG TACCAGTTCC TTTTTTNCCT TAAAAGGGTT GCCNAATAAA 
    CCCNAAAACN CCCTNGNAAC AAAAAAAGGG CCCCNCNATT TTAAAGNGGG 
    GGGGGTTTAN NNAAACTTTN TNGGGAANGG GATTNCAACT NTTTTTTAAA 
    NNTTTTCAAG GGGGNTTTTT TGGNCCCTTT TTTTTTCCCC CCNNAAGGAN 
    GGNGGNNNNN NTTTTTTTTT TNGGNNNCCC CTNCCCNNGG GGGNNAANNN 
    GGGGNAAAAT TNNCCCCCNA GNNNNTTTT

AT4G00460.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 292 Blast hits to 291 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00460.2

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR