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11-4052-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10685512 [Map]; Strand: c
      • AT1G30320.1 - [+] show detail - Remorin family protein
        Distance: 2558; Region: intergenic
      • AT1G30330.1 - [+] show detail - auxin response factor 6
        Distance: 310; Region: intergenic
    Flanking Genome Sequence: 11-4052-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTA TGAAACGAAA TTTGTAGAAT GAGTATGGTT 
    TTTGTTTGCG TCTTCATGTT AAGATAATTA GAATATTATA ACATGGTAAA 
    AATGGAAATC TAACTCCTAT TAACTTGAAA ATAAACGTCG TTTTGATAAT 
    TGATCGAAAT TGTTGTGAAT ATGGAAAATA TCTTGCAATA TAACTTTTTC 
    TTGTTCGGTT TTATCGGAAT GGGATTAGGT AAGTTATGAA ATGGGCATCA 
    TTTGAATAGT AAGAAGAATT TATGATTTAG TTTGGTATTT GATATTATTT 
    TTGTTTGGTT GTCCATTAGG ATATATATAT AATAGAGTGA CCAATTAATT 
    GAAGACCATG TTTTATAAAT GATTTTTAGT CAAAGAAATA ACAAATCTGA 
    TAAAGAGATA TTTGTAAGTA TTTGGTTTTG ATGTGTGGCG TATGAATGTG 
    ATTCACATAA ATCTTTAGTG GTGGGACTAT ATATTCTAAG TAAGAAATTG 
    GGAATGGTTG AAAATAATGT TGGGTGCATG TGGTAGGGAC ATTTATAGAT 
    GACACAAGTT AGGGCACTTT CATGAGCCCT AATTAAATAG TGCATGGNGA 
    CCCATCATTC TGAATGTNCT CACCTTCTTT CTTTTCTTTN NTTTNACCTT 
    NTTTCTCTTT TAAAAGTTAT TTCTTCNTCT TNCAAATCAN NNNTNAATTT 
    TANNTNCNTA GGANGAGNNC CNTNCTTNCN TGGNTAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10685555 [Map]; Strand: c
      • AT1G30320.1 - [+] show detail - Remorin family protein
        Distance: 2601; Region: intergenic
      • AT1G30330.1 - [+] show detail - auxin response factor 6
        Distance: 267; Region: intergenic
    Flanking Genome Sequence: 11-4052-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCTTT 
    GGTGAAAACT AAACTTACTA TAAACGATAA GGGCATATAT TAATTTACCT 
    ACCAATAAAA ATGTCCTACG AACTACGGAT CGATACGTGT CTAGAGATAA 
    AGTTTTTGCT GACGCAAAAT GAGATCTAAT TTTAGGGTAA AGCCCCAAAT 
    TGCGGGTCGG AATATTTTGG TGTTTCACAC AACAAAACCA CAAAACGCTT 
    TCACTTCCAA TAAGGAGATT GGGACCCAAA TCACTTTCTC TGTGGACCAT 
    TTTAGTCAGA CAAAGTCTTA ATGTAACTCC AAAATAACCC TTCACTATCA 
    TATTGATTGA AGAAATGAGT AAAGAAAGTG ACATATATAG AGTTCAGTAA 
    AAATATTCAT ATAAGAAAAA GACCAAAAGA TCTTATAATT ACAGTATTAC 
    GAGTCGACAG AGGGATTATA TAGTTTTTGT TTCCATCAAA GGCAAAGGCA 
    AATCTCCCTT TTTTATAAGT AATAAAGAGA GATTTTTGCT AGTAATTAAA 
    CTAAGATGAT CTCACTACTA ATTTATAAGA TTGAAACTTA ACTTGAATAA 
    AAAGGGAGGT TTCCATCTAC TTCTAGTAGT TGAATGAACC CCCAACTGAT 
    GCGATACCGT TACCGAGATT CCTCGGGTCT GACCGGTTCC CAAAGTTGGC 
    ACAGTTCCCC GGTTGCTCGG GAGCCTTATC CGCATTGTTG GAAGATGGCG 
    CGGAGTTTGA NAAGCTTCAA GGNCTCTTTT TTCCCATTTG TTGC

AT1G30320.1

Model type
Protein coding
Short Description
Remorin family protein
Computational Description
Remorin family protein; FUNCTIONS IN: DNA binding; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT2G02170.2); Has 12397 Blast hits to 7447 proteins in 1066 species: Archae - 25; Bacteria - 2897; Metazoa - 2750; Fungi - 978; Plants - 862; Viruses - 38; Other Eukaryotes - 4847 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G30330.1

Model type
Protein coding
Short Description
auxin response factor 6
Curator Summary
Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167.
Computational Description
auxin response factor 6 (ARF6); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, response to auxin stimulus, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 8 (TAIR:AT5G37020.1); Has 63215 Blast hits to 27346 proteins in 1335 species: Archae - 8; Bacteria - 4193; Metazoa - 21348; Fungi - 6939; Plants - 6324; Viruses - 577; Other Eukaryotes - 23826 (source: NCBI BLink).
Link
InterPro Scan - TAIR