1. Home
  2. Mutant Lines
  3. 11-4009-1

11-4009-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9849519 [Map]; Strand: c
      • AT1G28190.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1596; Region: intergenic
      • AT1G28200.1 - [+] show detail - FH interacting protein 1
        Distance: 628; Region: intergenic
    Flanking Genome Sequence: 11-4009-1 - 5-prime edge 
    NCNTTACNNN NNNACAAAAT CGGTTATTCG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CNGNTATGTG CAAACCGATN TCTCGATTAT 
    GNTTAATANT GATGGCATAT CAGGGTGTTA AAAGTGTTTG TGCTACACAA 
    AACAAAGATA ATGTGAAGTC TCACAGAAGA AGCTACCTAT TGAGGATATG 
    ATTGATATTA AGGATATGAT TGATATCCTA GATTGCCAAT GTCGTGGATA 
    CACATATGTA AAGTCGTATA TACTCTCATT CATTACATTG ATGTACCCTA 
    GGTCCCTAGC TACTCACCCT TGTATATATA TTGTGATTCT CACGATGTAA 
    GAAAATCATC TCTTTTATAA ACTTCTATAT GGTATCATAC TATCATGAGC 
    ATGAGTTCTC TTCAGACGTT TTACCTCCCC AGTCCCCACA ATCCATAAGC 
    TACATAAAAC CGATCTCCGG TTTCCACATT AATTTACCAT TAGTATTTAC 
    AAAATTTTGT AAGTAAAAGA AAAATAAGGC AATCATGCAA AATCGGAAAA 
    AAAAANAANG GCNAAANGGA ANGGGNNANT GGCAAAANNN ACCCTTTGGG 
    GNGAAANANT TAANTTTTTN CCNTTNAANT NGGGGAATTT AGNAAGGTAA 
    CANNNNAAGG GGAGGAAATG TCNTCAAANT CCNTTTNANA CCCNGGGGTT 
    TNNCGGTAAA GGGGNANGAC GGTGGCTNNG NGTTTTAACN CACCATNTTT 
    TTTTNCTTTT GGGNGNCAAC AGGCCAAAAA ATTTNTTNTG NAACCGGGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9849370 [Map]; Strand: c
      • AT1G28190.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1447; Region: intergenic
      • AT1G28200.1 - [+] show detail - FH interacting protein 1
        Distance: 777; Region: intergenic
    Flanking Genome Sequence: 11-4009-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCNT 
    NGNNTGAGCC GGANNTNCAG ACTNACACTC TNNCNCNGAT GGTNCAGCAG 
    CTATCAGTAT TTTGCTGTTG TTGTTTTCAA CGGATGTATA TGGTTCAACT 
    ATATTTACAT TTTTTTTTAA AAGATCCAAC CTATATTAAC ATTTNATGAC 
    ACAATCACTC GATAACCATT GAATATATAT ATATTGTAAG ACTGACCATG 
    TTCANTTAAC NCANNAANAG NCCAAANGCT AAATCTNNAN NTNNGATGGG 
    CNCTACNCAC ANTTCATATN CGTNACANCT TTAATNNNAN ATTCANNGGA 
    CGTATGCTCG TTGGTNATCN AAGAATAANA CNNCNGCGAN CANTNGGNTN 
    TATGACANAC AATTNNNTNA CTNNNTNAAN NNNGNNACTA TCNAANCAAN 
    GATNCAAAAN AATAGNANNN GNCAGNGNNN NAANNACANN CTNTCCTTCC 
    GNNNTNGCGN NCNNCNCCTG NTTTNNCNNN NNNNCNCCCC NGTNNNNATT 
    NTNNNTTTTN AGCNTCGCNG NCCNTGTTGC NNCTCCCCGG AGNNCNNNCC 
    CCGCNNCTNC TNGTTNGNNC CNTTTNTNCC GTNCCCACNC GNCNNTTNTN 
    NNNTTTNNNA TNCCCNCNCT CNCCCNGNNT TTTGTNGTTN NNNNGGNTNG 
    TNANNGNACN ACNNNGNNNN GANGCCANNC GNGGNTNTTT CGTAGNCNNC 
    CCTTTCNANT NTCCCNNCGN ANTCNTCTNG NNCNNNATNN GNCGTNNNCC 
    CNCCCACGTN GNTNCCNTAT GCCCCCNCCA NCAN

AT1G28190.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12340.1); Has 166 Blast hits to 162 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 5; Plants - 124; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G28200.1

Model type
Protein coding
Short Description
FH interacting protein 1
Curator Summary
VirF-interacting protein FIP1
Computational Description
FH interacting protein 1 (FIP1); CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain family protein (TAIR:AT2G22475.1); Has 416 Blast hits to 413 proteins in 43 species: Archae - 4; Bacteria - 12; Metazoa - 9; Fungi - 9; Plants - 369; Viruses - 1; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR