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11-3586-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 233771 [Map]; Strand: c
      • AT1G01650.1 - [+] show detail - SIGNAL PEPTIDE PEPTIDASE-LIKE 4
        Distance: 0; Region: intron11 (CDS)
      • AT1G01650.2 - [+] show detail - SIGNAL PEPTIDE PEPTIDASE-LIKE 4
        Distance: 0; Region: intron10 (CDS)
    Flanking Genome Sequence: 11-3586-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG GAGACAAGAT ATTGTTTAGA AAAAGAATTG 
    ATAACTGTAG GGATGTGTTT TCAGGTGATC CATCTTATCA TTTTCAGTAA 
    TAAAAAGGAA ACCTATTATG ATAAGTACCT TAATCTAATG TTAAATCCGA 
    TCAAAATCGT GCACCGTTCT GCAGGTACGA CTGGCTGGCG AACAAGAGGC 
    TAAAGTCAGG GTACTTCCTT GGGACAATGT CTGCTTATGG TCTAGGTATG 
    ATCCCTCACG TAGGGGAGAA ACGAATAAGA AATCTAGTAA AGGTTTTTTA 
    ATATGATTCT TGACAATCAC AGGTCTTCTC ATAACATACA TAGCTCTAAA 
    CTTGATGGAC GGACATGGGC AACCGGCTCT GCTTTACATC GTCCCATTCA 
    TACTAGGTAA GAACACTGAA CCCACAACAG ATGTTTTGGA ACCAAAAGCT 
    ATGTATGTTT TGAAACTAAG AATGGTTTGT GGTGCAATGT GTCAGGTACT 
    TTGTTCGTGT TGGGTCACAA GAGAGGTGAC TTGAAGACGC TGTGGACAAC 
    AGGGGAACCC GACAGGCCAT GCCCTCACGT TCGTCTTCAA CCTCAATCGT 
    CTTAAAACAA CCTGCTNTGT NTCANATGGG AACAGATAAA AATCANATGA 
    TCCTCTAGTT TTTTTTTATT GNTAATACAA CACACCCCTT NTTAGGGNAA 
    TATNTATGNN TNTGTACNCT TTNNNANAAN NAAANANGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 259709 [Map]; Strand: w
      • AT1G01700.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 2
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 11-3586-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGGCAAGATT CATTGCAACA AGGTAATTAA GAAACAAACA GTGACCTGAA 
    TCATGTTTTA TTGAATATTA TAACAATTTA TGGTTTGTGG TTTGCAGGAT 
    GTTGGAAAAG CTGTGTTAGA GAGTTATTCA AGAGTTCTTG AAGGTTTAGC 
    NTTTTAACAT AGTTGCTTGG ATTGATGATG TTCTTTATGT AGACAAAACA 
    ATGAGAGGAG AAGAATGATG AGTATAATTA CTTTTAATTT CTTCTACCTA 
    GTAAGATTCA AATTGAAGTA AAATCATATT AAGAATTGTT TTCCTTATGT 
    AAGAAAGACG AACGCTGTAT ATAGATTATT AGATACCGGG AATAATATTA 
    GTGGGGAGAA TTTAACATTT AGTTATGTTT TAAAACAAGT GTTAAGAGTT 
    AAATAAAAGT ATATTTTTAA ATATTTATTA ATATACTAAA AACAAGTGCT 
    AAAATTTTAA ATTATGTGTA AACCCATATT AAACGTATAA CATCTCTTAA 
    GTCTTAAGTC AGCNCCNAAT ATGAAATCAA TCATAGCTTA ATTAACTTTT 
    CTTCANAAGA ANAANAANAG ACGATCTCCN NAANATACCT CTTNAGTCTT 
    TTTNANNAAN NANCNAACCT GNTCGTTGAT GAGGAGATNA NCACCCNGGG 
    NNNNANCNNC NTGNNNNNTN AAA

AT1G01650.1

Model type
Protein coding
Short Description
SIGNAL PEPTIDE PEPTIDASE-LIKE 4
Computational Description
SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (SPPL4); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (TAIR:AT1G63690.1); Has 1466 Blast hits to 1433 proteins in 284 species: Archae - 0; Bacteria - 176; Metazoa - 611; Fungi - 153; Plants - 303; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01650.2

Model type
Protein coding
Short Description
SIGNAL PEPTIDE PEPTIDASE-LIKE 4
Computational Description
SIGNAL PEPTIDE PEPTIDASE-LIKE 4 (SPPL4); FUNCTIONS IN: peptidase activity, aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase A22, presenilin signal peptide (InterPro:IPR006639), Peptidase A22B, signal peptide peptidase (InterPro:IPR007369); BEST Arabidopsis thaliana protein match is: SIGNAL PEPTIDE PEPTIDASE-LIKE 2 (TAIR:AT1G63690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01700.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 2
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 2 (ROPGEF2); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 3 (TAIR:AT4G00460.2); Has 308 Blast hits to 304 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR