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11-3457-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13382367 [Map]; Strand: c
      • AT4G26488.1 - [+] show detail - other RNA
        Distance: -742; Region: promoter
      • AT4G26500.1 - [+] show detail - chloroplast sulfur E
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 11-3457-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TCTCTTAAGA GCTCGATCAG GATTGTGTTA 
    AATGAGAGAT AGATATTGAA GGATATAAAT AATGTTTTCG CCAATCGCCA 
    CATGATTCAC CATTTTCAAA CTGATTTCCC TTTATCTTAT GAGGGTCAAG 
    GTCTTTTTTG TTTTGATATG GTTTCCTGAT ATTAAGTTTT GTACCTACGC 
    TTTGAGAGAT GAATAGAGAG AATGCTCAAG GTTGTTGTCC ATTTGGCTAA 
    GTTCGAATCG TTAGAAAGAT CACAGCACCT AGGGAAAGCG AAAAAGGAAT 
    TTGGGGAGAA AAATGGTACT ATATTCATGC CACCATTAGA CATGCGAAGT 
    TTCTTGTTCA TTTTTTAATT CTTCTAGAAT CTAGATACTC AAAGTTGGTA 
    TTGTCTAATC AAGTGATGCA AGTTGGTTTG AGGGACTACA GAAAAAAAGA 
    AAGAGATTTG GTTGCTTTAC TTCTTTCTGA TAAAATAAGT AAAAAATGTG 
    AAAGGAGTTT CAGATGATCC CTGTTTCAGT CTACCGTTAG ACATGTGATG 
    TTTCTTAAAG CCCCATTANC TGAGACTTGT GGGGGTTTAT ATACAATCAN 
    CTTTACNTAC CTGTCTANTG AAACCAGCTG NGGTTTTANC CAANCAANNT 
    NTGNANCTTT TNTTTNCTNA AANNANGNAT NNTTTTTTTT TNTNNNNNNN 
    NNANNNGANT TNAAANCCNC NNNNCCCCCC CCNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13382361 [Map]; Strand: c
      • AT4G26488.1 - [+] show detail - other RNA
        Distance: -736; Region: promoter
      • AT4G26500.1 - [+] show detail - chloroplast sulfur E
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 11-3457-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCTTAACATT ATTAGAAGGT CCAGAGAACA ATATCCAAAG CAAATGGACC 
    AAAAGAAGTA AAAGAATCAG GACCTGACTT CTTCCAATGT TACACCCTCA 
    AACCTCAGCA GGAGTCTTTG CCACAATAGA GAGAGCATGT AACCCGCTCT 
    TCAACTCATC TTGCAACAAG TCATATATCA GCCTATGTCT CTTGACCAAG 
    CT

AT4G26488.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G26490
Link
InterPro Scan - TAIR

AT4G26500.1

Model type
Protein coding
Short Description
chloroplast sulfur E
Curator Summary
Sulfur acceptor that interacts with and activates the cysteine desulfurases, AtSufS in plastids and AtNifS1 in mitochondria, and both activations are vital during embryogenesis. Dual localization in mitochondria and chloroplasts. Involved in Fe-S cluster biogenesis in mitochondria and plastids. Expressed in all major tissues, with higher expression in green parts. Its expression is light-dependent and regulated at the mRNA level. Activates the cysteine desulfurase activity of CpNifS for chloroplastic iron-sulfur cluster biogenesis.
Computational Description
chloroplast sulfur E (CPSUFE); FUNCTIONS IN: enzyme activator activity, transcription regulator activity; INVOLVED IN: iron-sulfur cluster assembly, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fe-S metabolism associated SufE (InterPro:IPR003808), BolA-like protein (InterPro:IPR002634); BEST Arabidopsis thaliana protein match is: BolA-like family protein (TAIR:AT1G55805.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR