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11-3450-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 214547 [Map]; Strand: w
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -850; Region: promoter
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -850; Region: promoter
    Flanking Genome Sequence: 11-3450-1 - 5-prime edge 
    GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTATGTTCC ATATACTTAT ATTTTAAAAA TAAACTTAAT 
    ATAAGTATGT CTAACATATT CAACAAATTT TAGTTAATAG AAAGTGAACT 
    AAGGAGTATA GACAATGCAT ACATATAACT AGGTAGCAAA AAATTAGTAA 
    TTATATGGGT TGAAAAATTA AATGAAAGTA AGAAAAATGT TACATCAAAA 
    GATATAAATG CATACCATTC ATTACATTAA AAGATTGAAG GTGAAAAAGA 
    TTAAAGCCAT CAACAGTTTC GTATTCTTGC CCATCACGAT ACCGTGAAAG 
    GGTTGATCGA GAAACCCTAG CTACGAATAA GAAGTAAGGC ATTTCTTATA 
    GTCGACGAAA CAATAATAAA GTAGTTTTGC ATTGATGAGA CATTGCCTTC 
    TTGCCCATGC AGCTATGAAC CTAAAATGTT TGCACAAACT TAGAAATCAA 
    ATAAATGTCA TCGCTTTCCT TGACAGACCC GAACCATAGA AAATGATTGG 
    AAACAAAATT TAATAGAGTT TTGATGCTAA CCCTTTAATC ATTTTAGTTC 
    TCTTTTAGTT GATATTGTTT TGTTTTCCGA AAGCAATAGA GCAGAAACCT 
    TAGTAATGGG AGTTTCATCA GATTCTGAAT TGGAGAAATC ATTAGTTCTT 
    CACTGTTTTT GGCCTCCATC TTNAGCTCCC ATGCTTTCCT CTGCATTTAT 
    CCTACAAAAT AATAAATTTT CTTGAGAANT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 214483 [Map]; Strand: w
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -786; Region: promoter
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -786; Region: promoter
    Flanking Genome Sequence: 11-3450-1 - 3-prime edge 
    TCAACAAGTA AATAAAGGTG TATATGTTGA AACTTATTAA TATTGTATAA 
    TATCATAGTC CATAGTACAC TAAAATAATG ACCCATAGAT TAAGTAAATG 
    CGTAAAATGC GTGTACAACG AGAAAATGGG ACGCACNGTC TTGTCTAACG 
    CACNGAACCA TGCAAATATA TACTTTGTCT TCTCCATTAC ATTAAATTAT 
    CATGTGCTAA ACTAAATTAT AACTATACAA CTCAAATTGA AACCATAATA 
    CATTACACTA ATATAAATAT TAACCTATTA TGAGTTGCGG TTCATCGTGT 
    AGGCTACATG GGGATAAGCC AATCTCCAAC CATGTGATAA TTGGTCTAAT 
    TTAATAAACG GTTGACACAT AGAATTAAAA TAAAATTCCC AATGGAGGTG 
    TTACTATAGA CCGACCAAAG ATTACTTCTT AAAAATATAA AGGTCAAGGG 
    ATGATATATA CATTGAACAT TCACCCACAT CTCATCTTCA ATCAAAGATA 
    TTTTCATATA ATTGAATACA TATATGGGGT TCAACAAATT ATAATTCTAA 
    ATTTACATTA GATGTCTAAA TTCGTAAAAG TGAAAAGAAA ATATATAAAT 
    TGATCATTGG TCGAATGTGC AATCATCAAT AACTAAACAT ATGTATAATT 
    TCCCATTGGA GCTAATAATT TATTTGTGGG TGTGGAGGGA TC

AT4G00460.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 292 Blast hits to 291 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00460.2

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR