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11-3416-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 214059 [Map]; Strand: w
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -362; Region: promoter
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -362; Region: promoter
    Flanking Genome Sequence: 11-3416-1 - 3-prime edge 
    ATNAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTG 
    ATCTCATCTT CAATCAAAGA TATTTTCATA TAATTGAATA CATATATGGG 
    GTTCAACAAA TTATAATTCT AAATTTACAT TAGATGTCTA AATTCGTAAA 
    AGTGAAAAGA AAATATATAA ATTGATCATT GGTCGAATGT GCAATCATCA 
    ATAACTAAAC ATATGTATAA TTTCCCATTG GAGCTAATAA TTTATTTGTG 
    GGTGTGGAGG GATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 214134 [Map]; Strand: w
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -437; Region: promoter
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -437; Region: promoter
    Flanking Genome Sequence: 11-3416-1 - 5-prime edge 
    TGGGTGAATG TTCAATGTAT ATATCATCCC TTGACCTTTA TATTTTTAAG 
    AAGTAATCTT TGGTCGGTCT ATAGTAACAC CTCCATTGGG AATTTTATTT 
    TAATTCTATG TGTCAACCGT TTATTAAATT AGACCAATTA TCACATGGTT 
    GGAGATTGGC TTATCCCCAT GTAGCCTACA CGATGAACCG CAACTCATAA 
    TAGGTTAATA TTTATATTAG TGTAATGTAT TATGGTTTCA ATTTGAGTTG 
    TATAGTTATA ATTTAGTTTA GCACATGATA ATTTAATGTA ATGGAGAAGA 
    CAAGTATATA TTTGCATGGT TCGTGCGTTA GACAGACGTG CGTCCCATTT 
    TCTCGTTGTA CACGCATTTT ACGCATTTAC TTAATCTATG GGTCATTATT 
    TTAGTGTACT ATGGACTATG ATATTATACA ATATTAATAA GTTTCAACAT 
    ATACACCTTT ATTTACTTGT TGAGATATGT TCCATATACT TATATTTTAA 
    AAATAAACTT AATATAAGTA TGTCTAACAT ATTCAACAAA TTTTAGTTAA 
    TAGAAAGTGA ACTAAGGAGT ATAGACAATG CATACATATA ACTAGGTAGC 
    AAAAAATTAG TAATTATATG GGTTGAAAAA TTAAATGAAA GTAAGAAAAA 
    TGTTACATCA AAAGATATAA ATGCATACCA TTCATTACAT TAAAAGATTG 
    AAGGTGAAAA AGATTAAAGC NT

AT4G00460.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 292 Blast hits to 291 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00460.2

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR