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11-3354-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 214647 [Map]; Strand: c
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -950; Region: promoter
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -950; Region: promoter
    Flanking Genome Sequence: 11-3354-1 - 5-prime edge 
    CNTTAAAAAC TAACAAAATC GGTTATTCGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC ATATTGCATT GTCTATACTC CTTAGTTCAC 
    TTTCTATTAA CTAAAATTTG TTGAATATGT TAGACATACT TATATTAAGT 
    TTATTTTTAA AATATAAGTA TATGGAACAT ATCTCAACAA GTAAATAAAG 
    GTGTATATGT TGAAACTTAT TAATATTGTA TAATATCATA GTCCATAGTA 
    CACTAAAATA ATGACCCATA GATTAAGTAA ATGCGTAAAA TGCGTGTACA 
    ACGAGAAAAT GGGACGCACG TCTGTCTAAC GCACGAACCA TGCAAATATA 
    TACTTGTCTT CTCCATTACA TTAAATTATC ATGTGCTAAA CTAAATTATA 
    ACTATACAAC TCAAATTGAA ACCATAATAC ATTACACTAA TATAAATATT 
    AACCTATTAT GAGTTGCGGT TCATCGTGTA GGCTACATGG GGATAAGCCA 
    ATCTCCAACC ATGTGATAAT TGGTCTAATT TAATAAACGG TTGACACATA 
    GAATTAAAAT AAAATTCCCA ATGGAGGTGT TACTATAGAC CGACCAAAGA 
    TTACTTCTTA AAAATATAAA GGTCAAGGGA TGATATATAC ATTGAACATT 
    CACCCACATC TCATCTTCAA TCAAAGATAT TTTCATATAA TTGAATACAT 
    ATATGGGGGT TCAACAAATT ATAATTCTAA ATTACATTAN ATGTCTAAAT 
    TCGTAAAAAG TGAAAAGAAA TTTNTAAATT GATCATTGGT CGAATGNGCA 
    ATCATCAATA ACTA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 214642 [Map]; Strand: c
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -945; Region: promoter
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: -945; Region: promoter
    Flanking Genome Sequence: 11-3354-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    ATGCATACAT ATAACTAGGT AGCAAAAAAT TAGTAATTAT ATGGGTTGAA 
    AAATTAAATG AAAGTAAGAA AAATGTTACA TCAAAAGATA TAAATGCATA 
    CCATTCATTA CATTAAAAGA TTGAAGGTGA AAAAGATTAA AGCCATCAAC 
    AGTTTCGTAT TCTTGCCCAT CACGATACCG TGAAAGGGTT GATCGAGAAA 
    CCCTAGCTAC GAATAAGAAG TAAGGCATTT CTTATAGTCG ACGAAACAAT 
    AATAAAGTAG TTTTGCATTG ATGAGACATT GCCTTCTTGC CCATGCAGCT 
    ATGAACCTAA AATGTTTGCA CAAACTTAGA AATCAAATAA ATGTCATCGC 
    TTTCCTTGAC AGACCCGAAC CATAGAAAAT GATTGGAAAC AAAATTTAAT 
    AGAGTTTTGA TGCTAACCCT TTAATCATTT TAGTTCTCTT TTAGTTGATA 
    TTGTTTTGTT TTCCGAAAGC AATAGAGCAG AAACCTTAGT AATGGGAGTT 
    TCATCAGATT CTGAATTGGA GAAATCATTA GTTCTTCACT GTTTTTGGCC 
    TCCATCTTCA GCTCCCATGC TTTCCTCTGC ATTTATCCTA CAAAAATAAA 
    TAAATTTTCT TGAGAAATTT TGAGATTATA TGTTATTGNC GATGTTCTTG 
    ATATTTCAAT GTGCTCAAAC NCCNAAAAGT NCTNNTNAAA GATGAACCTA 
    ANATTAATAA GTNTNCANAA AGNTNCNNNN NNGGGCNNNN NNCCNCCNTN

AT4G00460.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 292 Blast hits to 291 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00460.2

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR