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11-3261-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 8422349 [Map]; Strand: c
      • AT4G14700.1 - [+] show detail - origin recognition complex 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 11-3261-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    CCCCAAACCC CAGAAACTCT CACTCCTCTT CGTAGATCTT CTCGTCATGT 
    TTCCCGTAAA ATCAATCTGG AAAATGACCC AATCGATTTT CCAGAAAGAG 
    AATCAATCGA AGAAATCAAT CTAATTCGAA AACCTAGAAA ACGAACCAAT 
    GATATTGTTG TTGCAGAGAA GTCGAAGAAG AAGAAGATAG ATCCGGAAGT 
    TTCCTTCTCT CCTGTTTCAC CAATTCGATC TGAGACGAAG AAGACGAAGA 
    AGAAGAAGAG AGTTTATTAC AACAAAGTCG AATT

AT4G14700.1

Model type
Protein coding
Short Description
origin recognition complex 1
Curator Summary
Encodes origin of replication complex 1a subunit.The protein contains a PHD domain,binds methylated DNA and appears to function as a transcriptional activator.
Computational Description
origin recognition complex 1 (ORC1A); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Origin recognition complex, subunit 1 (InterPro:IPR020793), ATPase, AAA+ type, core (InterPro:IPR003593), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: origin of replication complex 1B (TAIR:AT4G12620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR