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11-2714-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2612434 [Map]; Strand: c
      • AT5G08130.6 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -2184; Region: intergenic
      • AT5G08139.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -3911; Region: intergenic
    Flanking Genome Sequence: 11-2714-1 - 5-prime edge
    CTTTTGTGTA TGCATAAAGT TTCTGTAATT AATGTTTTAT TTAAAAACAC 
    TTTAACAACA AAATAAATAA ATTAAGGGTT TATATTTTTT TAATTAAACT
    TCTGAAAAGA GAATGTTTGA TAAATTGTAA TTCTGTAAGA AATCAACGTA
    GAGAGCATTG ATATCTAACA TTAAAACCAA AAAAAAAAAA NGGNCTTGGN
    NNNNNNGTNN TNNCCTNNTT NCCAAANANN NNTTAAANTT NGNCCCCCCT
    NAAAANTTTN NNAAANNTNG NTTTNAAANN AGNNNTNACN GGGGNCNNAA
    NCCGGGGGNG NNNTNGGNAN AAAAANNCNA CCCGGGGCNG GNANCCNCCC
    GGGCCCNNNN GGGGG
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2612550 [Map]; Strand: c
      • AT5G08130.6 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: -2300; Region: intergenic
      • AT5G08139.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -3795; Region: intergenic
    Flanking Genome Sequence: 11-2714-1 - 3-prime edge
    CACAAAAGAG TGTGTGGGAG AGCATCTCAT CTGAATTAGC TGTCTTCTTT 
    ACTTCTTTTT TTCCTTATAA AGAGGACTAT TAGTTGTCTC TAATCATTGT
    TATTTTCTTA ATAGTATAGT AACAGATTAA ATAATCATAA AGCAATTAGA
    AAAGAAGAAT AAGAAGCTGG ACTTGAAGAA AAACAAATGT ATTAGTAATG
    CGGACATTCC TCTGTACATT TGCACAGGAA TCCTCTTAGG GATCAGTTAA
    CAAATAGTTT ATCTATCTAG ATATCATGTG ACTTAGGGTT AAAACACGAG
    ATTAAACAAC TAATTATGAT ACATTGAAAT TAAATATCAA GTTTTTAACC
    AAAGAGAAGG CTACGAGCCT TTGGATCTAA GCGGACACGT GGCAGTTGCG
    CCGCGTAAAT CGCGCCGTAT CACGTGATAA CGAAACCTTT TGGGGTATTT
    TTGGCTGCCT ACCTCACAGG CTCCCCCATC CATCACGTGG CCAACTCACA
    CCTCTCGATT ATTGCGGGTC CCACGTTTCT TTTTTACGCT ATCCCGTTTT
    CACTCTTTTT TATTCAAAAT ATAAATTAAT TTGCTAATTA TAGATATAAA
    AGCTATCTTA AAACAAAAGC TGTTAAAATG CTTTGTTAGG CAAAGGGGAA
    AACAAGAACA AAAACTATGT ACTTTGAAAA TAACGGACCG TATAATTTTG
    ATATGAAAAA GAGAAATTCT AACCATTAAT GCC

AT5G08130.6

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary
Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).
Computational Description
BIM1; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1).
Link
InterPro Scan - TAIR

AT5G08139.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G60820.1); Has 9271 Blast hits to 9218 proteins in 288 species: Archae - 4; Bacteria - 19; Metazoa - 2506; Fungi - 730; Plants - 4517; Viruses - 59; Other Eukaryotes - 1436 (source: NCBI BLink).
Link
InterPro Scan - TAIR